Genome Sequence of the Freshwater Yangtze Finless Porpoise
Yuan, Yuan1,2; Zhang, Peijun3; Wang, Kun1,2; Liu, Mingzhong3; Li, Jing1; Zheng, Jinsong4; Wang, Ding4; Xu, Wenjie1; Lin, Mingli3; Dong, Lijun3; Zhu, Chenglong1; Qiu, Qiang1,2; Li, Songhai3; Qiu, Qiang(Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China)
2018-04-01
Source PublicationGENES
Volume9Issue:4
Contribution Rank第1完成单位
Abstract

The Yangtze finless porpoise (Neophocaena asiaeorientalis ssp. asiaeorientalis) is a subspecies of the narrow-ridged finless porpoise (N. asiaeorientalis). In total, 714.28 gigabases (Gb) of raw reads were generated by whole-genome sequencing of the Yangtze finless porpoise, using an Illumina HiSeq 2000 platform. After filtering the low-quality and duplicated reads, we assembled a draft genome of 2.22 Gb, with contig N50 and scaffold N50 values of 46.69 kilobases (kb) and 1.71 megabases (Mb), respectively. We identified 887.63 Mb of repetitive sequences and predicted 18,479 protein-coding genes in the assembled genome. The phylogenetic tree showed a relationship between the Yangtze finless porpoise and the Yangtze River dolphin, which diverged approximately 20.84 million years ago. In comparisons with the genomes of 10 other mammals, we detected 44 species-specific gene families, 164 expanded gene families, and 313 positively selected genes in the Yangtze finless porpoise genome. The assembled genome sequence and underlying sequence data are available at the National Center for Biotechnology Information under BioProject accession number PRJNA433603.

SubtypeArticle
KeywordYangtze Finless Porpoise Endangered Species Genome Genome Assembly Annotation Genome Evolution
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
DOI10.3390/genes9040213
URL查看原文
Indexed BySCI
Language英语
WOS KeywordSECONDARY AQUATIC ADAPTATION ; PHYLOGENETIC ANALYSIS ; ADAPTIVE EVOLUTION ; TOOL ; NEOPHOCAENA ; ALIGNMENTS ; EXTINCTION ; CETACEANS ; PROGRAM
WOS SubjectGenetics & Heredity
WOS IDWOS:000435182200041
Citation statistics
Cited Times:4[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Version出版稿
Identifierhttp://ir.idsse.ac.cn/handle/183446/5964
Collection深海科学研究部_深海生物学研究室_海洋哺乳动物与海洋生物声学研究组
深海科学研究部_深海生物学研究室
Corresponding AuthorQiu, Qiang(Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China)
Affiliation1.Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China
2.Northwestern Polytech Univ, Qingdao Res Inst, Qingdao 266200, Peoples R China
3.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Marine Mammal & Marine Bioacoust Lab, Sanya 572000, Peoples R China
4.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Hubei, Peoples R China
Recommended Citation
GB/T 7714
Yuan, Yuan,Zhang, Peijun,Wang, Kun,et al. Genome Sequence of the Freshwater Yangtze Finless Porpoise[J]. GENES,2018,9(4).
APA Yuan, Yuan.,Zhang, Peijun.,Wang, Kun.,Liu, Mingzhong.,Li, Jing.,...&Qiu, Qiang.(2018).Genome Sequence of the Freshwater Yangtze Finless Porpoise.GENES,9(4).
MLA Yuan, Yuan,et al."Genome Sequence of the Freshwater Yangtze Finless Porpoise".GENES 9.4(2018).
Files in This Item: Download All
File Name/Size DocType Version Access License
2018-Genome sequence(560KB)期刊论文作者接受稿开放获取CC BY-NC-SAView Download
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Yuan, Yuan]'s Articles
[Zhang, Peijun]'s Articles
[Wang, Kun]'s Articles
Baidu academic
Similar articles in Baidu academic
[Yuan, Yuan]'s Articles
[Zhang, Peijun]'s Articles
[Wang, Kun]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Yuan, Yuan]'s Articles
[Zhang, Peijun]'s Articles
[Wang, Kun]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: 2018-Genome sequence of the freshwater Yangtze finless porpoise.pdf
Format: Adobe PDF
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.