Genome Sequence of the Freshwater Yangtze Finless Porpoise
Yuan, Yuan1,2; Zhang, Peijun3; Wang, Kun1,2; Liu, Mingzhong3; Li, Jing1; Zheng, Jinsong4; Wang, Ding4; Xu, Wenjie1; Lin, Mingli3; Dong, Lijun3; Zhu, Chenglong1; Qiu, Qiang1,2; Li, Songhai3; Qiu, Qiang(Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China)
2018-04-01
发表期刊GENES
卷号9期号:4
产权排序第1完成单位
摘要

The Yangtze finless porpoise (Neophocaena asiaeorientalis ssp. asiaeorientalis) is a subspecies of the narrow-ridged finless porpoise (N. asiaeorientalis). In total, 714.28 gigabases (Gb) of raw reads were generated by whole-genome sequencing of the Yangtze finless porpoise, using an Illumina HiSeq 2000 platform. After filtering the low-quality and duplicated reads, we assembled a draft genome of 2.22 Gb, with contig N50 and scaffold N50 values of 46.69 kilobases (kb) and 1.71 megabases (Mb), respectively. We identified 887.63 Mb of repetitive sequences and predicted 18,479 protein-coding genes in the assembled genome. The phylogenetic tree showed a relationship between the Yangtze finless porpoise and the Yangtze River dolphin, which diverged approximately 20.84 million years ago. In comparisons with the genomes of 10 other mammals, we detected 44 species-specific gene families, 164 expanded gene families, and 313 positively selected genes in the Yangtze finless porpoise genome. The assembled genome sequence and underlying sequence data are available at the National Center for Biotechnology Information under BioProject accession number PRJNA433603.

文章类型Article
关键词Yangtze Finless Porpoise Endangered Species Genome Genome Assembly Annotation Genome Evolution
WOS标题词Science & Technology ; Life Sciences & Biomedicine
DOI10.3390/genes9040213
URL查看原文
收录类别SCI
语种英语
关键词[WOS]SECONDARY AQUATIC ADAPTATION ; PHYLOGENETIC ANALYSIS ; ADAPTIVE EVOLUTION ; TOOL ; NEOPHOCAENA ; ALIGNMENTS ; EXTINCTION ; CETACEANS ; PROGRAM
WOS类目Genetics & Heredity
WOS记录号WOS:000435182200041
引用统计
被引频次:1[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
版本出版稿
条目标识符http://ir.idsse.ac.cn/handle/183446/5964
专题深海科学研究部_深海生物学研究室_海洋哺乳动物与海洋生物声学研究组
通讯作者Qiu, Qiang(Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China)
作者单位1.Northwestern Polytech Univ, Ctr Ecol & Environm Sci, Xian 710072, Shaanxi, Peoples R China
2.Northwestern Polytech Univ, Qingdao Res Inst, Qingdao 266200, Peoples R China
3.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Marine Mammal & Marine Bioacoust Lab, Sanya 572000, Peoples R China
4.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Hubei, Peoples R China
推荐引用方式
GB/T 7714
Yuan, Yuan,Zhang, Peijun,Wang, Kun,et al. Genome Sequence of the Freshwater Yangtze Finless Porpoise[J]. GENES,2018,9(4).
APA Yuan, Yuan.,Zhang, Peijun.,Wang, Kun.,Liu, Mingzhong.,Li, Jing.,...&Qiu, Qiang.(2018).Genome Sequence of the Freshwater Yangtze Finless Porpoise.GENES,9(4).
MLA Yuan, Yuan,et al."Genome Sequence of the Freshwater Yangtze Finless Porpoise".GENES 9.4(2018).
条目包含的文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可
2018-Genome sequence(560KB)期刊论文作者接受稿开放获取CC BY-NC-SA浏览 请求全文
个性服务
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Yuan, Yuan]的文章
[Zhang, Peijun]的文章
[Wang, Kun]的文章
百度学术
百度学术中相似的文章
[Yuan, Yuan]的文章
[Zhang, Peijun]的文章
[Wang, Kun]的文章
必应学术
必应学术中相似的文章
[Yuan, Yuan]的文章
[Zhang, Peijun]的文章
[Wang, Kun]的文章
相关权益政策
暂无数据
收藏/分享
文件名: 2018-Genome sequence of the freshwater Yangtze finless porpoise.pdf
格式: Adobe PDF
所有评论 (0)
暂无评论
 

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。