Lirex: A Package for Identification of Long Inverted Repeats in Genomes
Wang, Yong; Huang, Jiao-Mei; Wang, Yong(Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China)
2017-04-01
发表期刊GENOMICS PROTEOMICS & BIOINFORMATICS
卷号15期号:2页码:141-146
产权排序第1完成单位
摘要Long inverted repeats (LIRs) are evolutionarily and functionally important structures in genomes because of their involvement in RNA interference, DNA recombination, and gene duplication. Identification of LIRs is highly complicated when mismatches and indels between the repeats are permitted. Long inverted repeat explorer (Lirex) was developed and introduced in this report. Written in Java, Lirex provides a user-friendly interface and allows users to specify LIR searching criteria, such as length of the region, as well as pattern and size of the repeats. Recombinogenic LIRs can be selected on the basis of mismatch rate and internal spacer size from identified LIRs. Lirex, as a cross-platform tool to identify LIRs in a genome, may assist in designing following experiments to explore the function of LIRs. Our tool can identify more LIRs than other LIR searching tools. Lirex is publicly available at http://124.16.219.129/Lirex.
文章类型Article
WOS标题词Science & Technology ; Life Sciences & Biomedicine
DOI10.1016/j.gpb.2017.01.005
URL查看原文
收录类别SCI
语种英语
WOS类目Genetics & Heredity
WOS记录号WOS:000401309200010
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文献类型期刊论文
条目标识符http://ir.idsse.ac.cn/handle/183446/4762
专题深海科学研究部_深海生物学研究室_海洋微生物宏基因组与分子进化研究组
通讯作者Wang, Yong; Wang, Yong(Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China)
作者单位Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China
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Wang, Yong,Huang, Jiao-Mei,Wang, Yong. Lirex: A Package for Identification of Long Inverted Repeats in Genomes[J]. GENOMICS PROTEOMICS & BIOINFORMATICS,2017,15(2):141-146.
APA Wang, Yong,Huang, Jiao-Mei,&Wang, Yong.(2017).Lirex: A Package for Identification of Long Inverted Repeats in Genomes.GENOMICS PROTEOMICS & BIOINFORMATICS,15(2),141-146.
MLA Wang, Yong,et al."Lirex: A Package for Identification of Long Inverted Repeats in Genomes".GENOMICS PROTEOMICS & BIOINFORMATICS 15.2(2017):141-146.
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