Lirex: A Package for Identification of Long Inverted Repeats in Genomes
Wang, Yong; Huang, Jiao-Mei; Wang, Yong(Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China)
2017-04-01
Source PublicationGENOMICS PROTEOMICS & BIOINFORMATICS
Volume15Issue:2Pages:141-146
Contribution Rank第1完成单位
AbstractLong inverted repeats (LIRs) are evolutionarily and functionally important structures in genomes because of their involvement in RNA interference, DNA recombination, and gene duplication. Identification of LIRs is highly complicated when mismatches and indels between the repeats are permitted. Long inverted repeat explorer (Lirex) was developed and introduced in this report. Written in Java, Lirex provides a user-friendly interface and allows users to specify LIR searching criteria, such as length of the region, as well as pattern and size of the repeats. Recombinogenic LIRs can be selected on the basis of mismatch rate and internal spacer size from identified LIRs. Lirex, as a cross-platform tool to identify LIRs in a genome, may assist in designing following experiments to explore the function of LIRs. Our tool can identify more LIRs than other LIR searching tools. Lirex is publicly available at http://124.16.219.129/Lirex.
SubtypeArticle
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
DOI10.1016/j.gpb.2017.01.005
URL查看原文
Indexed BySCI
Language英语
WOS SubjectGenetics & Heredity
WOS IDWOS:000401309200010
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Document Type期刊论文
Identifierhttp://ir.idsse.ac.cn/handle/183446/4762
Collection深海科学研究部_深海生物学研究室_海洋微生物宏基因组与分子进化研究组
Corresponding AuthorWang, Yong; Wang, Yong(Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China)
AffiliationChinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China
First Author AffilicationInstitute of Deep-sea Science and Engineering,CAS
Corresponding Author AffilicationInstitute of Deep-sea Science and Engineering,CAS
Recommended Citation
GB/T 7714
Wang, Yong,Huang, Jiao-Mei,Wang, Yong. Lirex: A Package for Identification of Long Inverted Repeats in Genomes[J]. GENOMICS PROTEOMICS & BIOINFORMATICS,2017,15(2):141-146.
APA Wang, Yong,Huang, Jiao-Mei,&Wang, Yong.(2017).Lirex: A Package for Identification of Long Inverted Repeats in Genomes.GENOMICS PROTEOMICS & BIOINFORMATICS,15(2),141-146.
MLA Wang, Yong,et al."Lirex: A Package for Identification of Long Inverted Repeats in Genomes".GENOMICS PROTEOMICS & BIOINFORMATICS 15.2(2017):141-146.
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