The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria
Ji, Boyang1,11; Zhang, Sheng-Da1,2,12; Zhang, Wei-Jia1,2,3,4,12; Rouy, Zoe5,6,7; Alberto, Francois1,2; Santini, Claire-Lise1,2; Mangenot, Sophie8; Gagnot, Severine1; Philippe, Nadege1,13; Pradel, Nathalie2,9; Zhang, Lichen1,14; Tempel, Sebastien1; Li, Ying2,3,4; Medigue, Claudine5,6,7; Henrissat, Bernard10; Coutinho, Pedro M.10; Barbe, Valerie8; Talla, Emmanuel1; Wu, Long-Fei1,2
2017-03-01
Source PublicationENVIRONMENTAL MICROBIOLOGY
Volume19Issue:3Pages:1103-1119
AbstractMagnetotactic bacteria (MTB) are a group of phylogenetically and physiologically diverse Gram-negative bacteria that synthesize intracellular magnetic crystals named magnetosomes. MTB are affiliated with three classes of Proteobacteria phylum, Nitrospirae phylum, Omnitrophica phylum and probably with the candidate phylum Latescibacteria. The evolutionary origin and physiological diversity of MTB compared with other bacterial taxonomic groups remain to be illustrated. Here, we analysed the genome of the marine magneto-ovoid strain MO-1 and found that it is closely related to Magnetococcus marinus MC-1. Detailed analyses of the ribosomal proteins and whole proteomes of 390 genomes reveal that, among the Proteobacteria analysed, only MO-1 and MC-1 have coding sequences (CDSs) with a similarly high proportion of origins from Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Gammaproteobacteria. Interestingly, a comparative metabolic network analysis with anoxic network enzymes from sequenced MTB and non-MTB successfully allows the eventual prediction of an organism with a metabolic profile compatible for magnetosome production. Altogether, our genomic analysis reveals multiple origins of MO-1 and M. marinus MC-1 genomes and suggests a metabolism-restriction model for explaining whether a bacterium could become an MTB upon acquisition of magnetosome encoding genes.
SubtypeArticle
WOS HeadingsScience & Technology ; Life Sciences & Biomedicine
DOI10.1111/1462-2920.13637
Indexed BySCI
Language英语
WOS KeywordMAGNETOSOME GENE CLUSTERS ; CANDIDATUS MAGNETOBACTERIUM ; FLAGELLAR APPARATUS ; PHYLUM NITROSPIRAE ; METABOLIC NETWORKS ; SEQUENCE ; REVEALS ; ISLAND ; LIFE ; SET
WOS SubjectMicrobiology
WOS IDWOS:000397525100023
Citation statistics
Cited Times:13[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.idsse.ac.cn/handle/183446/1824
Collection深海科学研究部_深海生物学研究室_深海微生物细胞生物学研究组
Affiliation1.Aix Marseille Univ, CNRS, LCB, Marseille, France
2.CNRS, Lab Int Associe Biomineralisat & Nanostruct LIA B, F-13402 Marseille 20, France
3.China Agr Univ, State Key Labs Agrobiotechnol, Beijing 100193, Peoples R China
4.China Agr Univ, Coll Biol Sci, Beijing 100193, Peoples R China
5.Commissariat Energie Atom & Energies Alternat, Inst Genom Genoscope, Lab Anal Bioinformat Genom & Metab, 2 Rue Gaston Cremieux, F-91057 Evry, France
6.CNRS, Unite Mixte Rech 8030, 2 Rue Gaston Cremieux, F-91057 Evry, France
7.Univ Evry, UEVE, Blvd Francois Mitterrand, F-91025 Evry, France
8.Commissariat Energie Atom & Energies Alternat, Inst Genom Genoscope, Lab Biol Mol Etud Genomes, 2 Rue Gaston Cremieux,CP 5706, F-91057 Evry, France
9.Aix Marseille Univ, Univ Toulon, CNRS, IRD, Marseille, France
10.Aix Marseille Univ, CNRS, AFMB, Marseille, France
11.Chalmers, Div Syst & Synthet Biol, Dept Biol & Biol Engn, Kemivagen 10, SE-41296 Gothenburg, Sweden
12.Chinese Acad Sci, Sanya Inst Deep Sea Sci & Engn, Deep Sea Sci Div, Sanya 572000, Hainan, Peoples R China
13.Aix Marseille Univ, CNRS, IGS, Marseille, France
14.Xinxiang Med Univ, Sch Lab Med, Xinxiang City 453003, Henan, Peoples R China
Recommended Citation
GB/T 7714
Ji, Boyang,Zhang, Sheng-Da,Zhang, Wei-Jia,et al. The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria[J]. ENVIRONMENTAL MICROBIOLOGY,2017,19(3):1103-1119.
APA Ji, Boyang.,Zhang, Sheng-Da.,Zhang, Wei-Jia.,Rouy, Zoe.,Alberto, Francois.,...&Wu, Long-Fei.(2017).The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.ENVIRONMENTAL MICROBIOLOGY,19(3),1103-1119.
MLA Ji, Boyang,et al."The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria".ENVIRONMENTAL MICROBIOLOGY 19.3(2017):1103-1119.
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